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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs1411478 1 rs4652545 chr1:180947608 STX6 chr1:180913175-180992046:- -0.58 -5.74 4.28E-7 Progressive supranuclear palsy
UVM cis rs1411478 1 rs4652547 chr1:180954089 STX6 chr1:180913175-180992046:- -0.58 -5.69 5.07E-7 Progressive supranuclear palsy
UVM cis rs1411478 1 rs4652548 chr1:180954130 STX6 chr1:180913175-180992046:- -0.58 -5.69 5.07E-7 Progressive supranuclear palsy
UVM cis rs8135828 1 rs465742 chr22:29959335 CABP7 chr22:30116344-30127818:+ -1.05 -5.75 4.14E-7 Lipid traits
UVM cis rs4660306 1 rs4660306 chr1:45978675 CCDC163P chr1:45960581-45965646:- 0.76 7.9 1.28E-10 Homocysteine levels
UVM cis rs4660306 1 rs4660870 chr1:45995231 CCDC163P chr1:45960581-45965646:- -0.72 -7.65 3.27E-10 Homocysteine levels
UVM cis rs2564921 1 rs4687701 chr3:53121276 RFT1 chr3:53122503-53164470:- 0.35 4.68 1.89E-5 Height
UVM cis rs8135828 1 rs468795 chr22:29955450 CABP7 chr22:30116344-30127818:+ -1.03 -6.84 6.87E-9 Lipid traits
UVM cis rs8135828 1 rs468852 chr22:29956156 CABP7 chr22:30116344-30127818:+ -1.03 -6.84 6.87E-9 Lipid traits
UVM cis rs8078723 1 rs4794823 chr17:38166265 GSDMA chr17:38119226-38134019:+ -0.87 -7.55 4.73E-10 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count
UVM cis rs8078723 1 rs4794824 chr17:38179290 GSDMA chr17:38119226-38134019:+ -0.87 -7.59 4.1E-10 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count
UVM cis rs8078723 1 rs4795412 chr17:38150604 GSDMA chr17:38119226-38134019:+ -0.87 -7.54 4.94E-10 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count
UVM cis rs8078723 1 rs4795415 chr17:38157995 GSDMA chr17:38119226-38134019:+ -0.87 -7.55 4.73E-10 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count
UVM cis rs8078723 1 rs4795416 chr17:38158133 GSDMA chr17:38119226-38134019:+ -0.87 -7.55 4.73E-10 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count
UVM cis rs8078723 1 rs4795418 chr17:38164851 GSDMA chr17:38119226-38134019:+ -0.87 -7.55 4.73E-10 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count